ENCODE
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publications – ENCODE
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental …
Project Overview – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements …
Search – ENCODE
PRO-cap in peripheral blood mononuclear cell Homo sapiens peripheral blood mononuclear cell Lab: Haiyuan Yu, Cornell Project: ENCODE Library construction method: capped RNA …
Getting Started – ENCODE
Instructions on how to browse and search for ENCODE data programmatically are provided in the REST API help document. In brief, all queries (see Query building) that can be performed via …
Data – ENCODE
Using the portal Cart REST API Citing ENCODE FAQ Project Overview Collaborations
Access to ENCODE data
All data generated by the ENCODE consortium is submitted to the DCC and available from the ENCODE portal (http://www.encodeproject.org). The data are reviewed for quality and …
Data Processing Pipelines – ENCODE
The ENCODE Data Coordinating Center Uniform Processing Pipelines are designed to create high-quality, consistent, and reproducible data. Pipelines are composed of discrete steps that …
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
ENCORE Matrix – ENCODE
The ENCORE project aims to study protein-RNA interactions by creating a map of RNA binding proteins (RBPs) encoded in the human genome and identifying the RNA elements that the …